Package: sdmTMB 0.6.0.9013
sdmTMB: Spatial and Spatiotemporal SPDE-Based GLMMs with 'TMB'
Implements spatial and spatiotemporal GLMMs (Generalized Linear Mixed Effect Models) using 'TMB', 'fmesher', and the SPDE (Stochastic Partial Differential Equation) Gaussian Markov random field approximation to Gaussian random fields. One common application is for spatially explicit species distribution models (SDMs). See Anderson et al. (2024) <doi:10.1101/2022.03.24.485545>.
Authors:
sdmTMB_0.6.0.9013.tar.gz
sdmTMB_0.6.0.9013.zip(r-4.5)sdmTMB_0.6.0.9013.zip(r-4.4)sdmTMB_0.6.0.9013.zip(r-4.3)
sdmTMB_0.6.0.9013.tgz(r-4.4-x86_64)sdmTMB_0.6.0.9013.tgz(r-4.4-arm64)sdmTMB_0.6.0.9013.tgz(r-4.3-x86_64)sdmTMB_0.6.0.9013.tgz(r-4.3-arm64)
sdmTMB_0.6.0.9013.tar.gz(r-4.5-noble)sdmTMB_0.6.0.9013.tar.gz(r-4.4-noble)
sdmTMB_0.6.0.9013.tgz(r-4.4-emscripten)sdmTMB_0.6.0.9013.tgz(r-4.3-emscripten)
sdmTMB.pdf |sdmTMB.html✨
sdmTMB/json (API)
NEWS
# Install 'sdmTMB' in R: |
install.packages('sdmTMB', repos = c('https://pbs-assess.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/pbs-assess/sdmtmb/issues
- dogfish - Example fish survey data
- hbll_s_grid - Example fish survey data
- pcod - Example fish survey data
- pcod_2011 - Example fish survey data
- pcod_mesh_2011 - Example fish survey data
- qcs_grid - Example fish survey data
- wcvi_grid - Example fish survey data
- yelloweye - Example fish survey data
ecologyglmmspatial-analysisspecies-distribution-modellingtmb
Last updated 2 months agofrom:b146eb3644. Checks:OK: 8 ERROR: 1. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 02 2024 |
R-4.5-win-x86_64 | OK | Nov 02 2024 |
R-4.5-linux-x86_64 | OK | Nov 02 2024 |
R-4.4-win-x86_64 | OK | Nov 02 2024 |
R-4.4-mac-x86_64 | ERROR | Nov 02 2024 |
R-4.4-mac-aarch64 | OK | Nov 02 2024 |
R-4.3-win-x86_64 | OK | Nov 02 2024 |
R-4.3-mac-x86_64 | OK | Nov 02 2024 |
R-4.3-mac-aarch64 | OK | Nov 02 2024 |
Exports:add_barrier_meshadd_utm_columnsBetacensored_poissondelta_betadelta_gammadelta_gamma_mixdelta_gengammadelta_lognormaldelta_lognormal_mixdelta_poisson_link_gammadelta_poisson_link_lognormaldelta_truncated_nbinom1delta_truncated_nbinom2dharma_residualsextract_mcmcgamma_mixgather_simsgengammaget_cogget_crsget_eaoget_indexget_index_simsget_parsggplot2_installedhalfnormallognormallognormal_mixmake_meshmvnormalnbinom1nbinom2nbinom2_mixnormalpc_maternplot_anisotropyplot_anisotropy2plot_pc_maternplot_smoothprojectreplicate_dfrun_extra_optimizationsanitysdmTMBsdmTMB_cvsdmTMB_simulatesdmTMB_stackingsdmTMBcontrolsdmTMBpriorsset_delta_modelspread_simsstudenttidytruncated_nbinom1truncated_nbinom2tweedievisreg_deltavisreg2d_delta
Dependencies:abindassertthatbootclassclassIntcliclisymbolsDBIdplyre1071fansifishModfmeshergenericsglueKernSmoothlatticelifecyclelme4magrittrMASSMatrixmgcvminqamvtnormnlmenloptrpillarpkgconfigproxyR6RcppRcppEigenrlangs2sfsptibbletidyselectTMBunitsutf8vctrswithrwk